Basic Information
Locus ID:
pistato.v30248550
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
omega-3 fatty acid desaturase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 34457031 | 34459061 | - | pistato.v30248550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.28 | 20,854.55 Da | 57.39 | 71.91 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 3 | 38 | 7.2E-8 | IPR000719 |
| Pfam | PF11960 | Domain of unknown function (DUF3474) | 56 | 126 | 6.7E-34 | IPR021863 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2 | 40 | 6.07E-10 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 84 | 7.0E-10 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 178 | 10.223842 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 151 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05580.2 | fatty acid desaturase 8. Encodes a temperature sensitive plastidic fatty acid desaturase. | 0 |
| RefSeq | XP_031264243.1 | omega-3 fatty acid desaturase, chloroplastic-like [Pistacia vera] | 0 |
| P48620 | Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum OX=4182 GN=FAD7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067ENE4 | Omega-3 fatty acid desaturase OS=Citrus sinensis OX=2711 GN=CISIN_1g012763mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg3253 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21601 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30022530, pistato.v30248550, pistato.v30266150 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0243780.1 |
| Poaceae | Oryza coarctata | 1 | Oco03G020330 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr22G012270 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G373000 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-19558, nbis-gene-3627, nbis-gene-57387 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.937 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-25123, nbisL1-mrna-30082 |