Basic Information
Locus ID:
pistato.v30247580
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 32923396 | 32925815 | - | pistato.v30247580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 21,645.75 Da | 36.30 | 78.23 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G16260.1 | RNA binding (RRM/RBD/RNP motifs) family protein. Encodes a RNA binding protein ELF9 (EARLY FLOWERING9). Loss of ELF9 function in the Wassilewskija ecotype causes early flowering in short days. ELF9 reduces SOC1 (SUPPRESSOR OF OVEREXPRESSION OF CO1) transcript levels, possibly via nonsense-mediated mRNA decay. | 0 |
| RefSeq | XP_030938727.1 | protein FAM133-like isoform X3 [Quercus lobata] | 0 |
| TrEMBL | B4FCG8 | RRM domain-containing protein OS=Zea mays OX=4577 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15765 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019633 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g058870 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg38482, Sbi_jg6586 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15339 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006436 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl07045 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012033, gene:ENSEOMG00000029428 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0011070, CQ.Regalona.r1.3BG0011290 |
| Anacardiaceae | Pistacia vera | 7 | pistato.v30111880, pistato.v30247470, pistato.v30247500 ... |
| Apiaceae | Apium graveolens | 1 | Ag11G03680 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G012380 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708592 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.496.V1.1, AsparagusV1_09.514.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G20379 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G43795.2, AT3G59800.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006256m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g25870.v2.2, Sp5g03340.v2.2 |
| Brassicaceae | Brassica nigra | 15 | BniB03g056530.2N, BniB03g056590.2N, BniB05g054940.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0310 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0312 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g02360, gene.Cymno04g17100 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0165s00019.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g07030 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-12112, nbisL1-mrna-4296 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.511 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025103 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G33588 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1435, BH09.1616, CH09.1800 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0312050, gene-QOZ80_4BG0343380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0178440.1 |
| Poaceae | Oryza coarctata | 2 | Oco07G009640, Oco08G009440 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g41920.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G147600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302246, Pt_Chr0302284 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G009710, Chr25G009970, Chr26G010040, Chr30G009760 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G611800 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2AG051130 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G353200.1, TraesCS2B02G371100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb078530_P006, Zm00001eb412540_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-36978, nbis-gene-5160 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g19980, Zma_g21541 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1515, evm.TU.LG11.879 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g05380, gene.Posoc07g13590 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1549 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18245 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2766 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.299 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001829 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5402 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12920 |
| Salicaceae | Populus euphratica | 2 | populus_peu22498, populus_peu23883 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636063 |
| Solanaceae | Solanum chilense | 1 | SOLCI004186600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007680 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.14316_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1849 |
| Zosteraceae | Zostera marina | 1 | Zosma01g26140.v3.1 |