Basic Information
Locus ID:
pistato.v30245640
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 28902176 | 28919537 | + | pistato.v30245640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 113,422.29 Da | 37.65 | 85.56 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07830 | STKc_MAK_like | 4 | 283 | 0.0 | - |
| CDD | cd03112 | CobW-like | 450 | 617 | 3.21711E-67 | - |
| Pfam | PF07683 | Cobalamin synthesis protein cobW C-terminal domain | 660 | 710 | 5.5E-7 | IPR011629 |
| Pfam | PF00249 | Myb-like DNA-binding domain | 765 | 815 | 1.5E-6 | IPR017930 |
| Pfam | PF00069 | Protein kinase domain | 4 | 283 | 2.4E-73 | IPR000719 |
| Pfam | PF02492 | CobW/HypB/UreG, nucleotide-binding domain | 450 | 600 | 1.4E-34 | IPR003495 |
| Pfam | PF14379 | MYB-CC type transfactor, LHEQLE motif | 853 | 899 | 3.2E-20 | IPR025756 |
| SUPERFAMILY | SSF90002 | Hypothetical protein YjiA, C-terminal domain | 660 | 711 | 2.48E-9 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 444 | 624 | 2.66E-18 | IPR027417 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 287 | 2.02E-93 | IPR011009 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 762 | 819 | 3.23E-15 | IPR009057 |
| Gene3D | G3DSA:3.40.50.300 | - | 441 | 619 | 1.2E-46 | IPR027417 |
| Gene3D | G3DSA:1.10.10.60 | - | 761 | 819 | 5.0E-27 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 84 | 291 | 1.0E-64 | - |
| Gene3D | G3DSA:3.30.1220.10 | - | 640 | 717 | 2.3E-18 | IPR036627 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 83 | 1.9E-24 | - |
| SMART | SM00220 | serkin_6 | 4 | 283 | 8.1E-101 | IPR000719 |
| TIGRFAM | TIGR01557 | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 762 | 817 | 1.1E-23 | IPR006447 |
| ProSiteProfiles | PS51294 | Myb-type HTH DNA-binding domain profile. | 759 | 819 | 12.184531 | IPR017930 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 4 | 283 | 48.399776 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 121 | 133 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 10 | 34 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 632 | 654 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 397 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19110.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_031282492.1 | cyclin-dependent kinase F-4 [Pistacia vera] | 0 |
| Q6Z8C8 | Cyclin-dependent kinase F-4 OS=Oryza sativa subsp. japonica OX=39947 GN=CDKF-4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5C7HC98 | Protein kinase domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_019431 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg18265, jg4695 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_15102, gene_21416 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah004442, Ah010449 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g107790, BVRB_9g219160 |
| Amaranthaceae | Salicornia bigelovii | 9 | Sbi_jg11616, Sbi_jg18388, Sbi_jg20623, Sbi_jg23822 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12370, Seu_jg20866 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005136, GOSA_00010956 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl51177, Sgl56358, Sgl56481, Sgl61889 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000004224, gene:ENSEOMG00000016287 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.5AG0001220, CQ.Regalona.r1.5BG0001320 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30129130, pistato.v30245640 |
| Apiaceae | Apium graveolens | 2 | Ag5G01290, Ag9G01186 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G017960, scaffold014295G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103697578, gene-LOC103715886, gene-LOC120107156 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.1025.V1.1, AsparagusV1_08.1613.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G02611, Ftri1G25061 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G15730.1, AT1G80480.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007622m.g.v1.0, Thhalv10018560m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g14020.v2.2, Sp5g35320.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g075760.2N, BniB06g041060.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G0135, Ceq02G0350 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G0120, Cgl02G0365 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno03g03500, gene.Cymno16g05010 |
| Dunaliellaceae | Dunaliella salina | 4 | Dusal.0089s00003.v1.0, Dusal.0167s00001.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate05g07150, gene.Thate07g12260 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3275 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.767, evm.TU.LG05.911 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003808, Pov_00034545 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G12025, Lb3G20697, Lb4G21946 |
| Poaceae | Echinochloa crus-galli | 5 | AH07.3810, AH09.2177, BH07.3631, BH09.2349, CH07.3704 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0149310, gene-QOZ80_2BG0204860 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0193910.1, HORVU.MOREX.r3.6HG0625860.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_026524, gene-QYE76_046087, gene-QYE76_063378 |
| Poaceae | Oryza coarctata | 4 | Oco03G024470, Oco04G024940, Oco07G014890, Oco08G014380 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g55630.1, LOC_Os04g51100.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G308500, gene-BS78_06G215100 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0206193, Pt_Chr0206223, Pt_Chr0301452, Pt_Chr0301492 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr09G017440, Chr0G009250, Chr0G013060, Chr13G001630 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G751100, Tel6E01G654200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG063220, gene_TRIDC2BG067190 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G439900.1, TraesCS2B02G461500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb258070_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-22749, nbis-gene-8406, nbis-gene-8407 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g14637, Zma_g20369 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG06.1279, evm.TU.LG10.587, evm.TU.LG11.624 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g04460, gene.Posoc09g01110 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.46188.3, evm.TU.Scaffold_14_RagTag.752 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-17712, nbisL1-mrna-7253, nbisL1-mrna-7272 |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-11477, nbisL1-mrna-16605, nbisL1-mrna-17590 ... |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-17093, nbisL1-mrna-7804, nbisL1-mrna-7820 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000025l.1, evm.TU.utg000023l.226 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00012178, Maker00012378, Maker00018802 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15849 |
| Rhizophoraceae | Rhizophora mangle | 6 | nbisL1-mrna-19469, nbisL1-mrna-22207, nbisL1-mrna-22222 ... |
| Salicaceae | Populus euphratica | 3 | populus_peu02596, populus_peu03271, populus_peu33478 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132633069, gene-LOC132635389 |
| Solanaceae | Solanum chilense | 2 | SOLCI004308500, SOLCI007513200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014866, gene-LOC107026914 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.19276_chr07_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC08G2268, TC09G1030 |
| Zosteraceae | Zostera marina | 2 | Zosma01g32480.v3.1, Zosma05g00130.v3.1 |