Basic Information
Locus ID:
pistato.v30245480
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 28646038 | 28651625 | - | pistato.v30245480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 24,062.44 Da | 35.40 | 91.63 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00180 | PKc | 61 | 205 | 1.10393E-16 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 55 | 204 | 3.1E-11 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 54 | 205 | 7.47E-22 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 35 | 136 | 1.3E-6 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 137 | 207 | 9.7E-9 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 55 | 215 | 15.170742 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32250.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_031279542.1 | E3 ubiquitin-protein ligase KEG-like [Pistacia vera] | 0 |
| Q8RWX4 | Protein KINASE OF THE OUTER CHLOROPLAST MEMBRANE 1 OS=Arabidopsis thaliana OX=3702 GN=KOC1 PE=1 SV=1 | 0 | |
| TrEMBL | V4UHH8 | Protein kinase domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10007749mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30245480 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G600300 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1AG030540, gene_TRIDC2AG079830 ... |
| Poaceae | Triticum aestivum | 1 | TraesCS1A02G201500.1 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21682 |