Basic Information
Locus ID:
pistato.v30241180
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 12685908 | 12694365 | + | pistato.v30241180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 80,788.36 Da | 41.91 | 67.02 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 516 | 746 | 1.78662E-48 | - |
| Pfam | PF08513 | LisH | 27 | 53 | 1.3E-7 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 525 | 552 | 8.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 562 | 594 | 6.4E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 631 | 666 | 1.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 714 | 747 | 0.019 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 515 | 746 | 1.43E-49 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 505 | 601 | 6.2E-23 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 602 | 747 | 7.2E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 669 | 706 | 3.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 555 | 594 | 1.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 513 | 552 | 1.9E-6 | IPR001680 |
| SMART | SM00667 | Lish | 25 | 57 | 0.0064 | IPR006594 |
| SMART | SM00320 | WD40_4 | 628 | 666 | 9.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 708 | 747 | 7.7E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 715 | 747 | 12.379869 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 25 | 57 | 9.129053 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 520 | 555 | 8.992876 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 715 | 747 | 11.629227 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 562 | 603 | 13.950525 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 520 | 561 | 10.909469 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 635 | 675 | 9.439068 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 562 | 594 | 10.996502 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 539 | 553 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 539 | 553 | 6.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 734 | 747 | 6.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 581 | 595 | 6.4E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 354 | 424 | - | - |
| Coils | Coil | Coil | 104 | 124 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_031267084.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X2 [Pistacia vera] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A2H5QGM9 | LisH domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_227980 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology