halophFGD

Basic Information

Locus ID: pistato.v30239340

Species & Taxonomic ID: Pistacia vera & 55513

Genome Assembly: GWHBKLD00000000

Description: WD domain, G-beta repeat

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	8728065	8742181	-	pistato.v30239340

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.89	104,642.58 Da	40.77	91.35	-0.10

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	402	438	7.6E-5	IPR001680
SUPERFAMILY	SSF50998	Quinoprotein alcohol dehydrogenase-like	401	857	5.1E-30	IPR011047
Gene3D	G3DSA:2.130.10.10	-	704	916	8.0E-16	IPR015943
Gene3D	G3DSA:2.130.10.10	-	318	630	2.2E-17	IPR015943
SMART	SM00320	WD40_4	766	806	4.9	IPR001680
SMART	SM00320	WD40_4	395	438	1.6E-5	IPR001680
SMART	SM00320	WD40_4	809	848	0.61	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	404	438	8.913786	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	404	438	10.608706	IPR001680

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT1G80490.2	TOPLESS-related 1.	0
RefSeq	XP_044477918.1	protein TOPLESS-RELATED PROTEIN 2-like isoform X2 [Mangifera indica]	0
Swiss-Prot	Q0J7U6	Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1	0
TrEMBL	A0A5C7GW19	TOPLESS OS=Acer yangbiense OX=1000413 GN=EZV62_024572 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Anacardiaceae	Pistacia vera	3	pistato.v30099520, pistato.v30099650, pistato.v30239340