Basic Information
Locus ID:
pistato.v30235850
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 4696049 | 4700290 | + | pistato.v30235850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 113,373.63 Da | 44.62 | 111.12 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 264 | 328 | 3.1E-12 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 192 | 842 | 2.44E-35 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 353 | 520 | 6.56E-11 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 247 | 330 | 3.44E-18 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 341 | 533 | 3.4E-12 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 239 | 334 | 1.5E-17 | IPR013083 |
| Gene3D | G3DSA:1.20.930.20 | - | 6 | 123 | 4.4E-10 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 634 | 973 | 1.2E-38 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 534 | 633 | 6.7E-9 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 263 | 326 | 8.2E-19 | IPR003613 |
| SMART | SM00185 | arm_5 | 407 | 446 | 14.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 673 | 713 | 8.8 | IPR000225 |
| SMART | SM00185 | arm_5 | 577 | 619 | 78.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 802 | 842 | 3.2 | IPR000225 |
| SMART | SM00185 | arm_5 | 536 | 576 | 320.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 758 | 799 | 61.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 874 | 915 | 120.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 716 | 757 | 140.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 259 | 333 | 23.380951 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 588 | 632 | 9.5724 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 727 | 755 | 8.837399 | IPR000225 |
| Coils | Coil | Coil | 61 | 88 | - | - |
| Coils | Coil | Coil | 196 | 216 | - | - |
| Coils | Coil | Coil | 126 | 153 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_031272358.1 | U-box domain-containing protein 43-like [Pistacia vera] | 0 |
| TrEMBL | A0A5C7IRX3 | RING-type E3 ubiquitin transferase OS=Acer yangbiense OX=1000413 GN=EZV62_000736 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg5773 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30235850 |
| Apiaceae | Apium graveolens | 1 | Ag5G02549 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G000790 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711617 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA05963 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0368 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0379 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.379 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1544 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2607 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6116 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.999 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012874 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6400 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2184 |
| Salicaceae | Populus euphratica | 1 | populus_peu21467 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609553 |
| Solanaceae | Solanum chilense | 1 | SOLCI003509000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031387 |