Basic Information
Locus ID:
pistato.v30233880
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 2669860 | 2678021 | - | pistato.v30233880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 122,343.53 Da | 43.94 | 79.55 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 424 | 458 | 5.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 885 | 919 | 0.0014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 340 | 370 | 0.15 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 807 | 1071 | 9.68E-36 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 420 | 929 | 9.42E-43 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 738 | 934 | 3.1E-24 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 343 | 672 | 4.7E-35 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 935 | 1086 | 2.1E-6 | IPR015943 |
| SMART | SM00668 | ctlh | 34 | 92 | 7.1E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 793 | 834 | 61.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.3E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 504 | 547 | 240.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 975 | 1011 | 8.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 880 | 919 | 1.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 837 | 877 | 2.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1031 | 1065 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 417 | 458 | 5.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 460 | 501 | 0.093 | IPR001680 |
| SMART | SM00320 | WD40_4 | 331 | 371 | 0.0019 | IPR001680 |
| SMART | SM00320 | WD40_4 | 550 | 590 | 1.3 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.049995 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 887 | 922 | 10.574686 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 887 | 928 | 13.215325 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 338 | 380 | 8.804123 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.767425 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 424 | 460 | 9.672996 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 568 | 599 | 10.074014 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 445 | 459 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 906 | 920 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1072 | 1103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1081 | 1103 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_044486597.1 | topless-related protein 2-like isoform X3 [Mangifera indica] | 0 |
| Q9LRZ0 | Topless-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=TPR2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A067G8R9 | Topless-related protein 3-like OS=Citrus sinensis OX=2711 GN=CISIN_1g001178mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology