Basic Information
Locus ID:
pistato.v30233220
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
PAPA-1-like family protein zinc finger (HIT type) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 2150185 | 2153368 | + | pistato.v30233220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.16 | 48,284.68 Da | 52.12 | 67.32 | -0.93 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04438 | HIT zinc finger | 390 | 421 | 2.8E-6 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 289 | 373 | 1.1E-17 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 289 | 374 | 1.6E-26 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 155 | - | - |
| Coils | Coil | Coil | 278 | 315 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06660.1 | PAPA-1-like family protein / zinc finger (HIT type) family protein. | 0 |
| RefSeq | XP_031264475.1 | uncharacterized protein LOC116122802 [Pistacia vera] | 0 |
| TrEMBL | V4S6Z0 | PAPA-1 domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10004963mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology