Basic Information
Locus ID:
pistato.v30232520
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 1587043 | 1623922 | + | pistato.v30232520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 474,830.97 Da | 45.78 | 88.67 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2654 | 2769 | 1.36197E-5 | - |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 112 | 5.3E-30 | IPR026854 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 138 | 387 | 1.3E-65 | IPR031646 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 581 | 809 | 1.8E-36 | IPR031642 |
| Pfam | PF00168 | C2 domain | 2654 | 2763 | 1.8E-4 | IPR000008 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2013 | 2176 | 7.7E-12 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2316 | 2402 | 9.2E-9 | IPR009291 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3393 | 3526 | 2.9E-9 | IPR009543 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2635 | 2761 | 6.06E-6 | IPR035892 |
| SUPERFAMILY | SSF50729 | PH domain-like | 851 | 950 | 2.0E-6 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 845 | 951 | 7.9E-6 | IPR011993 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 2638 | 2783 | 6.1E-6 | IPR035892 |
| SMART | SM00233 | PH_update | 838 | 950 | 0.0033 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 837 | 948 | 6.8547 | IPR001849 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 2633 | 2774 | 9.178896 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2225 | 2242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2220 | 2242 | - | - |
| Coils | Coil | Coil | 421 | 441 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_031256394.1 | LOW QUALITY PROTEIN: uncharacterized protein LOC116114393 [Pistacia vera] | 0 |
| A1Z713 | Intermembrane lipid transfer protein Vps13 OS=Drosophila melanogaster OX=7227 GN=Vps13 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5C7IR45 | C2 domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_000118 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology