Basic Information
Locus ID:
pistato.v30232460
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 1546139 | 1552972 | + | pistato.v30232460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 53,442.74 Da | 65.41 | 51.14 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 23 | 51 | 0.00411277 | IPR001202 |
| Pfam | PF00397 | WW domain | 22 | 52 | 1.7E-6 | IPR001202 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 53 | 2.86E-8 | IPR036020 |
| Gene3D | G3DSA:2.20.70.10 | - | 16 | 55 | 1.1E-5 | - |
| SMART | SM00456 | ww_5 | 21 | 54 | 1.0E-6 | IPR001202 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.250501 | IPR001202 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.2 | - | 0 |
| RefSeq | XP_031256334.1 | LOW QUALITY PROTEIN: ATP-dependent RNA helicase-like protein DB10 [Pistacia vera] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2H5N5Q4 | DEAD-box ATP-dependent RNA helicase 46 OS=Citrus unshiu OX=55188 GN=CUMW_017180 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology