Basic Information
Locus ID:
pistato.v30228630
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 31091281 | 31093462 | - | pistato.v30228630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 44,565.86 Da | 50.26 | 80.03 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 329 | 368 | 6.5E-8 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 322 | 372 | 2.96E-10 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 48 | 108 | 4.19E-6 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 113 | 233 | 3.27E-13 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 94 | 249 | 7.9E-18 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 314 | 372 | 4.8E-11 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 326 | 368 | 10.937226 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_031272814.1 | F-box protein At1g67340-like [Pistacia vera] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2H5NVH2 | MYND-type domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_079730 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology