halophFGD

Basic Information

Locus ID: pistato.v30228080

Species & Taxonomic ID: Pistacia vera & 55513

Genome Assembly: GWHBKLD00000000

Description: Pentatricopeptide repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	30631757	30635045	+	pistato.v30228080

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.04	57,873.86 Da	33.75	78.16	-0.43

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13041	PPR repeat family	255	302	4.0E-13	IPR002885
Pfam	PF13041	PPR repeat family	361	410	2.7E-11	IPR002885
Pfam	PF13041	PPR repeat family	186	234	7.3E-10	IPR002885
Pfam	PF12854	PPR repeat	322	350	7.9E-7	IPR002885
Pfam	PF01535	PPR repeat	121	149	0.3	IPR002885
Pfam	PF12854	PPR repeat	432	462	7.0E-10	IPR002885
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	63	215	3.4E-22	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	286	354	2.5E-18	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	355	500	3.4E-27	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	216	285	8.6E-18	IPR011990
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	438	469	9.4E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	258	292	5.5E-9	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	223	255	2.8E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	330	363	1.3E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	293	327	8.6E-9	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	365	392	4.2E-5	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	362	396	9.88715	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	435	469	12.408249	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	187	217	8.604678	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	221	255	12.287675	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	326	361	10.950397	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	256	290	10.917512	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	291	325	11.619036	IPR002885
MobiDBLite	mobidb-lite	consensus disorder prediction	1	39	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	7	39	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G04130.1	Tetratricopeptide repeat (TPR)-like superfamily protein.
RefSeq	XP_031270356.1	pentatricopeptide repeat-containing protein At3g04130, mitochondrial isoform X1 [Pistacia vera]
Swiss-Prot	Q9M8W9	Pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g04130 PE=2 SV=2
TrEMBL	A0A067GTK5	Pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Citrus sinensis OX=2711 GN=CISIN_1g010215mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg5752, jg9557
Aizoaceae	Mesembryanthemum crystallinum	2	gene_3540, gene_5373
Amaranthaceae	Beta vulgaris	1	BVRB_6g151540
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg26547, Sbi_jg34020, Sbi_jg42730, Sbi_jg45355
Amaranthaceae	Salicornia europaea	2	Seu_jg11218, Seu_jg15074
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00002583
Amaranthaceae	Suaeda glauca	4	Sgl35089, Sgl40474, Sgl73833, Sgl77335
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000002884, gene:ENSEOMG00000006357 ... gene:ENSEOMG00000015373, gene:ENSEOMG00000037249
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.6AG0003540, CQ.Regalona.r1.6BG0003500 ... CQ.Regalona.r1.7AG0010320
Anacardiaceae	Pistacia vera	2	pistato.v30228080, pistato.v30236350
Apiaceae	Apium graveolens	2	Ag1G01844, Ag5G02278
Arecaceae	Cocos nucifera	3	COCNU_03G001310, COCNU_03G001330, COCNU_04G007320
Arecaceae	Phoenix dactylifera	2	gene-LOC103718091, gene-LOC103718684
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.2689.V1.1, AsparagusV1_08.1881.V1.1
Asteraceae	Flaveria trinervia	2	Ftri15G22017, Ftri9G15803
Brassicaceae	Arabidopsis thaliana	2	AT3G04130.1, AT3G22670.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10020419m.g.v1.0, Thhalv10020548m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g03100.v2.2, Sp3g20430.v2.2
Brassicaceae	Brassica nigra	4	BniB01g059340.2N, BniB03g024780.2N, BniB07g032460.2N ... BniB07g032470.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq07G1278
Casuarinaceae	Casuarina glauca	1	Cgl07G1351
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno05g03570, gene.Cymno09g09580
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g04160
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.712, evm.TU.LG11.999
Plantaginaceae	Plantago ovata	2	Pov_00021764, Pov_00022238
Plumbaginaceae	Limonium bicolor	2	Lb1G00954, Lb1G08048
Poaceae	Echinochloa crus-galli	4	BH01.2664, BH01.761, CH01.757, Contig309.108
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0136490, gene-QOZ80_2BG0192130 ... gene-QOZ80_3AG0216460, gene-QOZ80_3BG0261780
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.5HG0510080.1.CDS1 ... HORVU.MOREX.r3.6HG0592070.1.CDS1
Poaceae	Lolium multiflorum	2	gene-QYE76_023481, gene-QYE76_061911
Poaceae	Oryza coarctata	3	Oco03G014520, Oco04G014970, Oco06G024280
Poaceae	Oryza sativa	1	LOC_Os02g38950.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G083600, gene-BS78_04G186700
Poaceae	Sporobolus alterniflorus	4	Chr01G005430, Chr09G012410, Chr12G037810, Chr13G008330
Poaceae	Thinopyrum elongatum	1	Tel6E01G415700
Poaceae	Triticum dicoccoides	4	gene_TRIDC5AG056230, gene_TRIDC5BG060280 ... gene_TRIDC6AG033070, gene_TRIDC6BG039410
Poaceae	Triticum aestivum	6	TraesCS5A02G384400.1.cds1, TraesCS5B02G389200.1.cds1 ... TraesCS5D02G394000.1.cds1, TraesCS6A02G213800.1.cds1, TraesCS6B02G243800.1.cds1, TraesCS6D02G196400.1.cds1
Poaceae	Zea mays	2	Zm00001eb057030_P001, Zm00001eb246390_P001
Poaceae	Zoysia japonica	1	nbis-gene-23463
Poaceae	Zoysia macrostachya	2	Zma_g13832, Zma_g494
Portulacaceae	Portulaca oleracea	2	evm.TU.LG02.2560, evm.TU.LG13.94
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g07610, gene.Posoc04g01610, gene.Posoc05g00670
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_17_RagTag.159, evm.TU.Scaffold_6_RagTag.775
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-15921, nbisL1-mrna-23199
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-16773, nbisL1-mrna-9301
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-14672, nbisL1-mrna-649
Rhizophoraceae	Kandelia candel	2	add.evm.TU.utg000011l.190, add.evm.TU.utg000013l.29
Rhizophoraceae	Kandelia obovata	1	Maker00006512
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-19530, nbisL1-mrna-22921
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-15954, nbisL1-mrna-3499
Salicaceae	Populus euphratica	5	populus_peu07647, populus_peu21418, populus_peu21419 ... populus_peu21420, populus_peu21689
Solanaceae	Lycium barbarum	2	gene-LOC132609668, gene-LOC132641233
Solanaceae	Solanum chilense	2	SOLCI004820900, SOLCI007024500
Solanaceae	Solanum pennellii	2	gene-LOC107020744, gene-LOC107031368
Tamaricaceae	Reaumuria soongarica	2	STRG.19726_chr07_+, gene_15533
Tamaricaceae	Tamarix chinensis	2	TC04G0518, TC09G0412
Zosteraceae	Zostera marina	3	Zosma01g34550.v3.1, Zosma01g40775.v3.1, Zosma04g00720.v3.1