Basic Information
Locus ID:
pistato.v30228030
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 30608418 | 30613885 | + | pistato.v30228030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.29 | 167,221.25 Da | 40.22 | 108.47 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1234 | 1454 | 4.15401E-120 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 601 | 823 | 1.63758E-91 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 289 | 576 | 1.73753E-86 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 922 | 1211 | 4.72085E-81 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 288 | 555 | 7.8E-24 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 628 | 758 | 6.0E-15 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1253 | 1401 | 2.0E-31 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 939 | 1164 | 3.0E-26 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 628 | 836 | 1.91E-43 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 923 | 1218 | 7.85E-48 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 282 | 584 | 7.98E-32 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1229 | 1462 | 6.64E-68 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 266 | 586 | 5.8E-47 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 891 | 1217 | 1.0E-52 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1219 | 1471 | 9.8E-82 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 620 | 869 | 2.0E-58 | IPR027417 |
| SMART | SM00382 | AAA_5 | 632 | 831 | 2.1E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1262 | 1453 | 3.9E-11 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 924 | 1199 | 34.622593 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1236 | 1470 | 17.833933 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 603 | 846 | 18.234091 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 288 | 568 | 32.299084 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 731 | 745 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_031269972.1 | putative ABC transporter C family member 15 isoform X2 [Pistacia vera] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7HGI5 | ABC-type xenobiotic transporter OS=Acer yangbiense OX=1000413 GN=EZV62_017430 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology