Basic Information
Locus ID:
pistato.v30225470
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 27098526 | 27104699 | + | pistato.v30225470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.57 | 42,525.61 Da | 55.54 | 82.20 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 167 | 216 | 2.97864E-30 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 5.958E-34 | - |
| Pfam | PF09280 | XPC-binding domain | 280 | 335 | 1.4E-23 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.4E-20 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 176 | 211 | 1.6E-13 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 361 | 396 | 6.4E-11 | IPR015940 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 276 | 342 | 1.7E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 344 | 403 | 2.04E-14 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 88 | 6.22E-25 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 170 | 222 | 1.8E-11 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 353 | 400 | 6.7E-22 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 271 | 336 | 4.6E-28 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 77 | 9.1E-30 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 166 | 216 | 1.0E-21 | - |
| SMART | SM00165 | uba_6 | 361 | 398 | 3.9E-8 | IPR015940 |
| SMART | SM00165 | uba_6 | 173 | 213 | 1.8E-4 | IPR015940 |
| SMART | SM00727 | CBM | 278 | 321 | 9.0E-8 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 4.6E-22 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 404 | 1.0E-111 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 358 | 399 | 14.546953 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 171 | 214 | 12.402311 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 76 | 20.87093 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 387 | 402 | 9.7E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 355 | 371 | 9.7E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 306 | 328 | 9.7E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 372 | 386 | 9.7E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 105 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_031249606.1 | ubiquitin receptor RAD23c-like [Pistacia vera] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | V4TH20 | Ubiquitin receptor RAD23 OS=Citrus clementina OX=85681 GN=CICLE_v10031777mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology