Basic Information
Locus ID:
pistato.v30225380
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
recombinational repair
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 26896111 | 26911359 | - | pistato.v30225380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 108,176.65 Da | 46.92 | 79.08 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 817 | 925 | 2.31258E-52 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 280 | 563 | 5.81247E-71 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 301 | 560 | 5.2E-44 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 820 | 916 | 9.5E-15 | IPR001650 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 679 | 722 | 2.7E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 675 | 717 | 8.73E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 261 | 564 | 4.09E-38 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 513 | 954 | 1.64E-51 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 474 | 602 | 4.7E-22 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 669 | 731 | 2.2E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 741 | 973 | 4.1E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 372 | 459 | 1.2E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 250 | 345 | 2.3E-11 | IPR038718 |
| SMART | SM00487 | ultradead3 | 276 | 574 | 5.8E-27 | IPR014001 |
| SMART | SM00490 | helicmild6 | 833 | 916 | 1.1E-15 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 680 | 719 | 11.471321 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 804 | 969 | 14.029366 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 295 | 568 | 11.659678 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 695 | 704 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 109 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_031284842.1 | helicase-like transcription factor CHR28 [Pistacia vera] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067FUU0 | Helicase-like transcription factor CHR28 OS=Citrus sinensis OX=2711 GN=CISIN_1g001680mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology