Basic Information
Locus ID:
pistato.v30219200
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
PHD finger protein MALE
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 12817559 | 12820147 | + | pistato.v30219200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.01 | 73,754.08 Da | 33.19 | 89.61 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15556 | PHD_MMD1_like | 594 | 639 | 1.17246E-25 | - |
| Pfam | PF00628 | PHD-finger | 595 | 641 | 1.5E-9 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 589 | 642 | 2.1E-13 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 580 | 644 | 3.2E-15 | IPR013083 |
| SMART | SM00249 | PHD_3 | 594 | 640 | 3.9E-7 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 592 | 642 | 8.5021 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 595 | 639 | - | IPR019786 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22260.1 | RING/FYVE/PHD zinc finger superfamily protein. Sporophytic factor controlling anther and pollen development. Mutants fail to make functional pollen;pollen degeneration occurs after microspore release and the tapetum also appears abnormally vacuolated. Similar to PHD-finger motif transcription factors. | 0 |
| RefSeq | XP_031249325.1 | PHD finger protein MALE STERILITY 1-like [Pistacia vera] | 0 |
| Q9FMS5 | PHD finger protein MALE STERILITY 1 OS=Arabidopsis thaliana OX=3702 GN=MS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7HJH5 | PHD domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_018317 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology