Basic Information
Locus ID:
pistato.v30218960
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 12145200 | 12153607 | - | pistato.v30218960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 146,805.06 Da | 35.57 | 94.59 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 715 | 740 | 0.001 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 282 | 313 | 0.024 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 1029 | 1046 | 0.0023 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 480 | 699 | 5.6E-39 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1231 | 1338 | 4.18E-13 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 1024 | 1105 | 3.4E-11 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 48 | 267 | 9.52E-31 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 704 | 985 | 1.45E-43 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 300 | 359 | 1.59E-5 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 459 | 702 | 2.97E-65 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 46 | 273 | 4.8E-51 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 276 | 366 | 9.6E-14 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1009 | 1121 | 3.5E-23 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1203 | 1304 | 5.4E-20 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 712 | 1005 | 1.8E-73 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 446 | 554 | 1.4E-29 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 566 | 711 | 3.6E-32 | - |
| SMART | SM00369 | LRR_typ_2 | 790 | 813 | 0.56 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 814 | 838 | 170.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 339 | 361 | 3.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 62 | 85 | 0.032 | IPR003591 |
| SMART | SM00220 | serkin_6 | 477 | 798 | 4.6E-26 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 962 | 984 | 220.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 938 | 961 | 70.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 477 | 842 | 33.276398 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1239 | 1340 | 9.107256 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 483 | 505 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 602 | 614 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66150.1 | transmembrane kinase 1. receptor-like transmembrane kinase I (TMK1) | 0 |
| RefSeq | XP_031275098.1 | LOW QUALITY PROTEIN: receptor-like kinase TMK3 [Pistacia vera] | 0 |
| P43298 | Receptor protein kinase TMK1 OS=Arabidopsis thaliana OX=3702 GN=TMK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7ZJ81 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_031801 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 5 | pistato.v30063460, pistato.v30063470, pistato.v30218920 ... |