Basic Information
Locus ID:
pistato.v30218920
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 12075959 | 12081888 | - | pistato.v30218920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.01 | 164,706.70 Da | 35.34 | 95.81 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 471 | 740 | 4.24925E-86 | - |
| CDD | cd14066 | STKc_IRAK | 1191 | 1463 | 1.94226E-91 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 1025 | 1062 | 4.7E-4 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 906 | 924 | 0.6 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 466 | 741 | 1.1E-47 | IPR000719 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 235 | 270 | 2.2E-6 | IPR025875 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 750 | 776 | 0.003 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 1187 | 1458 | 2.0E-49 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 29 | 63 | 0.0019 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 1022 | 1128 | 3.51E-15 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 751 | 997 | 1.0E-35 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 454 | 741 | 1.69E-76 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1176 | 1475 | 3.8E-80 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 34 | 278 | 3.06E-38 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 444 | 542 | 3.0E-31 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1158 | 1260 | 3.4E-31 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1022 | 1133 | 2.4E-26 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 747 | 1021 | 8.4E-55 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 299 | 6.4E-58 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 543 | 746 | 3.5E-55 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1261 | 1472 | 3.9E-59 | - |
| SMART | SM00220 | serkin_6 | 1185 | 1464 | 6.8E-45 | IPR000719 |
| SMART | SM00220 | serkin_6 | 465 | 746 | 1.1E-41 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 257 | 279 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 826 | 849 | 37.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1112 | 1133 | 340.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 976 | 999 | 370.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 160 | 183 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 952 | 975 | 42.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 902 | 925 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 233 | 256 | 10.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1185 | 1464 | 39.707367 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 465 | 751 | 40.046581 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 235 | 256 | 7.257614 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 471 | 493 | - | IPR017441 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1191 | 1214 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 590 | 602 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1308 | 1320 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1132 | 1154 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G24650.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_031275090.1 | LOW QUALITY PROTEIN: receptor-like kinase TMK3 [Pistacia vera] | 0 |
| Q9FYK0 | Receptor-like kinase TMK2 OS=Arabidopsis thaliana OX=3702 GN=TMK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7SL52 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_026537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 5 | pistato.v30063460, pistato.v30063470, pistato.v30218920 ... |