Basic Information
Locus ID:
pistato.v30218620
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 11492939 | 11502698 | + | pistato.v30218620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 130,017.91 Da | 37.00 | 78.34 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 248 | 299 | 0.00958497 | - |
| Pfam | PF05183 | RNA dependent RNA polymerase | 23 | 108 | 1.5E-17 | IPR007855 |
| Pfam | PF05183 | RNA dependent RNA polymerase | 563 | 812 | 2.5E-61 | IPR007855 |
| Pfam | PF05183 | RNA dependent RNA polymerase | 810 | 978 | 1.0E-56 | IPR007855 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14790.1 | RNA-dependent RNA polymerase 1. Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie, et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs. | 0 |
| RefSeq | XP_044490556.1 | RNA-dependent RNA polymerase 1-like [Mangifera indica] | 0 |
| Q9LQV2 | RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J6HPI5 | Aspartate-semialdehyde dehydrogenase OS=Cannabis sativa OX=3483 GN=G4B88_009028 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology