Basic Information
Locus ID:
pistato.v30218140
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 10699174 | 10703217 | - | pistato.v30218140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.12 | 60,954.77 Da | 50.61 | 65.65 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 332 | 355 | 1.1E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 287 | 312 | 5.9E-7 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 366 | 388 | 3.2E-5 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 326 | 359 | 3.4E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 360 | 393 | 3.4E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 281 | 311 | 6.36E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 323 | 360 | 8.1E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 361 | 393 | 1.1E-8 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 279 | 312 | 5.9E-13 | - |
| SMART | SM00547 | zf_4 | 366 | 390 | 5.0E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 333 | 357 | 9.0E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 289 | 313 | 6.3E-7 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 331 | 360 | 9.630757 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 364 | 393 | 9.133901 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 287 | 310 | 9.777556 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 291 | 310 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 368 | 387 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 335 | 354 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 533 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 533 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 501 | 515 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.1 | Ran BP2/NZF zinc finger-like superfamily protein. | 0 |
| RefSeq | XP_031271738.1 | zinc finger protein VAR3, chloroplastic-like [Pistacia vera] | 0 |
| P32770 | Putative RNA-binding protein involved in heterochromatin assembly OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NRP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5C7HLA6 | Zinc finger protein VAR3, chloroplastic OS=Acer yangbiense OX=1000413 GN=EZV62_018349 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology