Basic Information
Locus ID:
pistato.v30217290
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
SEC12-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 9214861 | 9218830 | - | pistato.v30217290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.86 | 44,044.10 Da | 40.07 | 87.82 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 335 | 364 | 0.11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 156 | 177 | 0.24 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 48 | 364 | 9.42E-35 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 46 | 372 | 1.6E-65 | IPR015943 |
| SMART | SM00320 | WD40_4 | 325 | 366 | 0.39 | IPR001680 |
| SMART | SM00320 | WD40_4 | 284 | 323 | 8.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 141 | 179 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 86 | 124 | 180.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 194 | 232 | 29.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 213 | 241 | 8.603614 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_031268785.1 | SEC12-like protein 2 [Pistacia vera] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A061E7J2 | Transducin/WD40 repeat-like superfamily protein, putative OS=Theobroma cacao OX=3641 GN=TCM_010880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology