Basic Information
Locus ID:
pistato.v30214620
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 4629368 | 4637495 | - | pistato.v30214620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 134,384.34 Da | 51.91 | 75.70 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 306 | 434 | 2.75014E-18 | - |
| CDD | cd12108 | Hr-like | 46 | 174 | 1.68537E-32 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1077 | 1120 | 1.59344E-16 | - |
| CDD | cd12108 | Hr-like | 656 | 803 | 2.8777E-28 | - |
| Pfam | PF05495 | CHY zinc finger | 986 | 1057 | 8.0E-8 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 1125 | 1182 | 1.1E-23 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 1077 | 1119 | 2.5E-6 | IPR001841 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 48 | 176 | 2.2E-10 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 652 | 804 | 3.2E-8 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 304 | 436 | 2.4E-7 | IPR012312 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1077 | 1123 | 1.17E-7 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 978 | 1039 | 9.68E-9 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1073 | 1122 | 1.1E-8 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 306 | 452 | 1.8E-20 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 42 | 194 | 2.1E-33 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1149 | 1191 | 1.7E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 649 | 862 | 1.9E-26 | - |
| SMART | SM00184 | ring_2 | 1078 | 1119 | 3.7E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1078 | 1120 | 11.07299 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1001 | 1077 | 19.114859 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 979 | 1048 | 21.388947 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_031248164.1 | zinc finger protein BRUTUS-like [Pistacia vera] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | V4UC22 | Zinc finger protein BRUTUS OS=Citrus clementina OX=85681 GN=CICLE_v10014065mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology