Basic Information
Locus ID:
pistato.v30212900
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 909128 | 914255 | - | pistato.v30212900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 65,132.93 Da | 50.05 | 93.62 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 265 | 557 | 2.6218E-43 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 263 | 299 | 1.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 521 | 557 | 5.0E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 477 | 514 | 0.019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 311 | 345 | 0.015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 349 | 387 | 0.02 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 258 | 557 | 9.46E-62 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 254 | 519 | 2.8E-55 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 520 | 577 | 1.9E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 261 | 300 | 2.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 431 | 469 | 63.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 518 | 558 | 5.2E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 473 | 515 | 0.66 | IPR001680 |
| SMART | SM00320 | WD40_4 | 348 | 387 | 0.016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 306 | 345 | 7.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 389 | 429 | 93.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 313 | 354 | 13.750016 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 313 | 350 | 10.495596 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 525 | 567 | 14.05078 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 104 | 152 | 9.052217 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 525 | 560 | 11.523771 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 268 | 302 | 10.706503 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 62 | 94 | 7.991929 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 268 | 309 | 13.181907 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 287 | 301 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 374 | 388 | 7.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 287 | 301 | 7.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 545 | 559 | 7.2E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_031251883.1 | WD repeat-containing protein 26 homolog [Pistacia vera] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7HK83 | WD repeat-containing protein 26-like OS=Acer yangbiense OX=1000413 GN=EZV62_018753 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology