Basic Information
Locus ID:
pistato.v30211920
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 28923934 | 28936450 | - | pistato.v30211920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.39 | 67,482.05 Da | 35.00 | 59.70 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00325 | chitinase_GH19 | 84 | 314 | 2.26071E-110 | - |
| CDD | cd06921 | ChtBD1_GH19_hevein | 328 | 366 | 7.50131E-18 | - |
| CDD | cd00325 | chitinase_GH19 | 393 | 623 | 6.77595E-112 | - |
| Pfam | PF00187 | Chitin recognition protein | 329 | 366 | 2.8E-13 | IPR001002 |
| Pfam | PF00182 | Chitinase class I | 83 | 314 | 4.4E-131 | IPR000726 |
| Pfam | PF00182 | Chitinase class I | 392 | 623 | 3.5E-134 | IPR000726 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 329 | 375 | 1.23E-12 | IPR036861 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 388 | 630 | 3.94E-108 | IPR023346 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 79 | 314 | 4.78E-105 | IPR023346 |
| Gene3D | G3DSA:1.10.530.10 | - | 397 | 629 | 5.5E-123 | - |
| Gene3D | G3DSA:1.10.530.10 | - | 83 | 314 | 4.7E-120 | - |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 475 | 532 | 5.5E-123 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 327 | 368 | 1.9E-16 | IPR036861 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 166 | 223 | 4.7E-120 | - |
| SMART | SM00270 | ChitinBD_3 | 329 | 366 | 6.4E-17 | IPR001002 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 327 | 368 | 10.935556 | IPR001002 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 536 | 546 | - | IPR000726 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 410 | 432 | - | IPR000726 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 339 | 358 | - | IPR018371 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 227 | 237 | - | IPR000726 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 101 | 123 | - | IPR000726 |
| PRINTS | PR00451 | Chitin-binding domain signature | 345 | 352 | 1.8E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 352 | 359 | 1.8E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 337 | 345 | 1.8E-5 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_042503486.1 | endochitinase A2-like [Macadamia integrifolia] | 0 |
| P93680 | Endochitinase OS=Persea americana OX=3435 GN=chi1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1R3GCP5 | Glycoside hydrolase, family 19, catalytic OS=Corchorus capsularis OX=210143 GN=CCACVL1_26958 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology