Basic Information
Locus ID:
pistato.v30211750
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 28536811 | 28542240 | - | pistato.v30211750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.23 | 75,179.95 Da | 54.67 | 79.66 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 216 | 347 | 1.29403E-57 | - |
| CDD | cd17920 | DEXHc_RecQ | 26 | 215 | 2.64459E-92 | - |
| Pfam | PF16124 | RecQ zinc-binding | 351 | 422 | 1.4E-11 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 39 | 196 | 1.7E-10 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 236 | 336 | 2.0E-11 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 86 | 358 | 5.09E-44 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 216 | 440 | 1.0E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 2 | 215 | 1.8E-74 | IPR027417 |
| SMART | SM00487 | ultradead3 | 33 | 224 | 8.8E-22 | IPR014001 |
| SMART | SM00490 | helicmild6 | 259 | 338 | 4.9E-17 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 27 | 473 | 1.4E-128 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 239 | 378 | 14.303232 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 45 | 208 | 18.984499 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 623 | 671 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 623 | 638 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 642 | 657 | - | - |
| Coils | Coil | Coil | 505 | 525 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_031287376.1 | ATP-dependent DNA helicase Q-like 3 [Pistacia vera] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2H5PNB6 | ATP-dependent DNA helicase OS=Citrus unshiu OX=55188 GN=CUMW_152150 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology