Basic Information
Locus ID:
pistato.v30210130
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
PA domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 26988839 | 26990708 | + | pistato.v30210130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.16 | 31,967.84 Da | 34.05 | 85.99 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 232 | 275 | 8.27279E-19 | - |
| Pfam | PF02225 | PA domain | 63 | 140 | 2.0E-6 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 232 | 275 | 4.3E-11 | IPR001841 |
| SUPERFAMILY | SSF52025 | PA domain | 82 | 202 | 4.84E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 229 | 281 | 2.52E-17 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 32 | 156 | 2.2E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 192 | 281 | 6.0E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 233 | 274 | 1.8E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 233 | 275 | 12.592549 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.2 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 0 |
| RefSeq | XP_031257598.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Pistacia vera] | 0 |
| Q9M622 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067FYQ6 | RING-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g018233mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology