Basic Information
Locus ID:
pistato.v30207720
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 23010629 | 23017056 | + | pistato.v30207720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 77,702.33 Da | 42.67 | 89.44 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 34 | 63 | 9.5E-4 | IPR001810 |
| Pfam | PF00646 | F-box domain | 366 | 389 | 0.0019 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 361 | 423 | 4.84E-9 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 34 | 76 | 2.22E-7 | IPR036047 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 120 | 309 | 4.5E-15 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 442 | 599 | 1.4E-11 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49610.1 | F-box family protein. | 0 |
| RefSeq | XP_031255052.1 | F-box protein At5g49610-like [Pistacia vera] | 0 |
| Q9FGY4 | F-box protein At5g49610 OS=Arabidopsis thaliana OX=3702 GN=At5g49610 PE=1 SV=1 | 0 | |
| TrEMBL | A0A835MYP6 | F-box domain-containing protein OS=Salix dunnii OX=1413687 GN=SADUNF_Sadunf07G0024400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg26011, jg26012, jg31188 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_24234, gene_24235 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah016032, Ah026551, Ah026552 |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_6g137470, BVRB_6g137480, BVRB_8g192530, BVRB_9g222500 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg14738, Sbi_jg5144, Sbi_jg55515 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg13133, Seu_jg26066 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00023105, GOSA_00023106, GOSA_00023107, GOSA_00027953 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl34757, Sgl34758, Sgl40128, Sgl40129, Sgl43991, Sgl48760 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000000066, gene:ENSEOMG00000002549 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.6AG0017760, CQ.Regalona.r1.6BG0018860 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30147680, pistato.v30207720 |
| Apiaceae | Apium graveolens | 7 | Ag10G00023, Ag3G02211, Ag4G00489, Ag7G02002, Ag9G00213 ... |
| Arecaceae | Cocos nucifera | 3 | COCNU_05G001370, scaffold001189G000010 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702702 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.2547.V1.1, AsparagusV1_03.678.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G14209, FtriNA18279 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0759 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0769 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2308, evm.TU.LG10.188 |
| Plantaginaceae | Plantago ovata | 8 | Pov_00001721, Pov_00004644, Pov_00012402, Pov_00012412 ... |
| Poaceae | Echinochloa crus-galli | 1 | BH01.556 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0213970, gene-QOZ80_3BG0259090 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0514220.1.CDS1 |
| Poaceae | Oryza coarctata | 1 | Oco05G025010 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g56500.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G063000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0106960 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G029790, Chr07G028860 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G646900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG059590, gene_TRIDC5BG063780 |
| Poaceae | Triticum aestivum | 2 | TraesCS5A02G411600.1.cds1, TraesCS5D02G420400.1.cds1 |
| Poaceae | Zea mays | 4 | Zm00001eb213720_P001, Zm00001eb250170_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-16350 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2656 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_15_RagTag.306, evm.TU.Scaffold_3_RagTag.272 ... |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-17131, nbisL1-mrna-26555, nbisL1-mrna-26581 ... |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-21188, nbisL1-mrna-3140, nbisL1-mrna-9570 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11803, nbisL1-mrna-17606, nbisL1-mrna-6008 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000001l.88, evm.TU.utg000011l.1213 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004721, Maker00012860 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15586, nbisL1-mrna-6480 |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-2304, nbisL1-mrna-2654, nbisL1-mrna-3098 ... |
| Salicaceae | Populus euphratica | 3 | populus_peu14234, populus_peu23555, populus_peu23556 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132622076, gene-LOC132622110, gene-LOC132625247 ... |
| Solanaceae | Solanum chilense | 6 | SOLCI000493100, SOLCI000706800, SOLCI000814900 ... |
| Solanaceae | Solanum pennellii | 7 | gene-LOC107009250, gene-LOC107010463, gene-LOC107010556 ... |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2049 |