Basic Information
Locus ID:
pistato.v30207320
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
lysM domain receptor-like kinase 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 22417674 | 22432297 | - | pistato.v30207320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 203,217.55 Da | 44.24 | 90.02 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 1391 | 1435 | 0.00371886 | IPR018392 |
| CDD | cd00118 | LysM | 187 | 230 | 3.04341E-5 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 944 | 1185 | 1.2E-36 | IPR001245 |
| Pfam | PF01476 | LysM domain | 777 | 821 | 0.0041 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 374 | 612 | 2.0E-34 | IPR000719 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1556 | 1811 | 2.1E-38 | IPR001245 |
| Pfam | PF01476 | LysM domain | 188 | 231 | 3.5E-7 | IPR018392 |
| Pfam | PF01476 | LysM domain | 1393 | 1436 | 0.0053 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 939 | 1192 | 1.94E-55 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 334 | 612 | 1.36E-59 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1531 | 1814 | 5.6E-62 | IPR011009 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 1374 | 1447 | 4.1E-6 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 323 | 415 | 1.9E-14 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 417 | 620 | 2.2E-50 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1512 | 1611 | 3.5E-16 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 992 | 1200 | 3.7E-52 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 924 | 991 | 2.4E-7 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1612 | 1823 | 1.2E-51 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 186 | 243 | 9.1E-7 | IPR036779 |
| SMART | SM00220 | serkin_6 | 352 | 615 | 7.5E-14 | IPR000719 |
| SMART | SM00220 | serkin_6 | 925 | 1189 | 4.3E-12 | IPR000719 |
| SMART | SM00220 | serkin_6 | 1548 | 1812 | 2.4E-21 | IPR000719 |
| SMART | SM00257 | LysM_2 | 1391 | 1436 | 2.1 | IPR018392 |
| SMART | SM00257 | LysM_2 | 187 | 231 | 9.7E-7 | IPR018392 |
| SMART | SM00257 | LysM_2 | 710 | 756 | 4.6 | IPR018392 |
| SMART | SM00257 | LysM_2 | 776 | 821 | 0.3 | IPR018392 |
| SMART | SM00257 | LysM_2 | 121 | 167 | 0.24 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 775 | 820 | 9.85397 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1544 | 1825 | 30.520266 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 186 | 230 | 11.704082 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 1390 | 1435 | 9.615698 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 871 | 1189 | 30.294121 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 120 | 166 | 9.251282 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 297 | 620 | 29.361277 | IPR000719 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 1657 | 1669 | - | IPR008266 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 830 | 849 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 827 | 852 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 257 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_031270774.1 | protein LYK5-like [Pistacia vera] | 0 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 0 | |
| TrEMBL | V4RW11 | Protein kinase domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10024731mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology