Basic Information
Locus ID:
pistato.v30207310
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
DA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 22404576 | 22411394 | + | pistato.v30207310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 56,973.13 Da | 61.28 | 67.07 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 158 | 210 | 9.76463E-21 | - |
| Pfam | PF00412 | LIM domain | 158 | 196 | 2.9E-8 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 279 | 497 | 1.3E-103 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 150 | 183 | 3.44E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 154 | 224 | 1.0E-9 | - |
| SMART | SM00132 | lim_4 | 157 | 221 | 1.9E-7 | IPR001781 |
| SMART | SM00726 | uim | 40 | 59 | 2.0 | IPR003903 |
| SMART | SM00726 | uim | 117 | 136 | 0.049 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 156 | 239 | 10.2862 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 117 | 136 | 9.905746 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 158 | 192 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 91 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 449 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 442 | - | - |
| Coils | Coil | Coil | 87 | 129 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_044501063.1 | protein DA1-related 1-like isoform X4 [Mangifera indica] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | V4SEK3 | LIM zinc-binding domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10025331mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology