Basic Information
Locus ID:
pistato.v30207290
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
DA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 22387683 | 22393965 | + | pistato.v30207290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 58,006.19 Da | 60.63 | 67.62 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 167 | 219 | 7.40598E-21 | - |
| Pfam | PF12315 | Protein DA1 | 288 | 503 | 4.2E-100 | IPR022087 |
| Pfam | PF00412 | LIM domain | 167 | 205 | 2.9E-8 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 159 | 192 | 2.57E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 163 | 250 | 2.1E-9 | - |
| SMART | SM00726 | uim | 126 | 145 | 0.049 | IPR003903 |
| SMART | SM00132 | lim_4 | 166 | 230 | 1.7E-7 | IPR001781 |
| SMART | SM00726 | uim | 40 | 59 | 17.0 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 126 | 145 | 9.905746 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 165 | 248 | 10.2268 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 167 | 201 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 448 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 455 | - | - |
| Coils | Coil | Coil | 118 | 138 | - | - |
| Coils | Coil | Coil | 91 | 111 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_044501063.1 | protein DA1-related 1-like isoform X4 [Mangifera indica] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | V4SEK3 | LIM zinc-binding domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10025331mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology