Basic Information
Locus ID:
pistato.v30205970
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Sec12-like protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 19583690 | 19594674 | - | pistato.v30205970 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 87,557.25 Da | 38.26 | 98.47 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05831 | Ribosomal_P1 | 458 | 541 | 3.77749E-22 | - |
| Pfam | PF00069 | Protein kinase domain | 604 | 650 | 2.1E-11 | IPR000719 |
| Pfam | PF00428 | 60s Acidic ribosomal protein | 475 | 537 | 1.2E-7 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 415 | 444 | 0.057 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 545 | 716 | 1.04E-16 | IPR011009 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 101 | 448 | 5.81E-28 | IPR011047 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 583 | 667 | 3.4E-12 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 86 | 452 | 1.1E-54 | IPR015943 |
| Gene3D | G3DSA:1.10.10.1410 | - | 454 | 515 | 1.4E-22 | IPR038716 |
| SMART | SM00220 | serkin_6 | 510 | 698 | 5.7E-5 | IPR000719 |
| SMART | SM00320 | WD40_4 | 274 | 312 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 405 | 446 | 0.16 | IPR001680 |
| SMART | SM00320 | WD40_4 | 364 | 403 | 17.0 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 448 | 796 | 11.298026 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 280 | 321 | 9.706414 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 414 | 444 | 8.536777 | IPR001680 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 633 | 645 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01470.1 | SEC12P-like 2 protein. Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER. | 0 |
| RefSeq | XP_031279948.1 | SEC12-like protein 2 isoform X1 [Pistacia vera] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A6P5X997 | SEC12-like protein 2 OS=Durio zibethinus OX=66656 GN=LOC111281500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology