Basic Information
Locus ID:
pistato.v30203690
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 15094487 | 15108097 | + | pistato.v30203690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.28 | 129,977.73 Da | 50.51 | 74.67 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01205 | Uncharacterized protein family UPF0029 | 987 | 1087 | 7.5E-26 | IPR001498 |
| Pfam | PF01753 | MYND finger | 69 | 106 | 3.1E-9 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 413 | 713 | 2.9E-41 | IPR001394 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 973 | 1092 | 1.37E-38 | IPR020568 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 63 | 111 | 6.1E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 411 | 724 | 2.35E-81 | IPR038765 |
| Gene3D | G3DSA:3.30.230.30 | - | 972 | 1095 | 5.8E-41 | IPR036956 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 407 | 725 | 1.2E-85 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 52 | 109 | 2.5E-11 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 413 | 716 | 50.431767 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 69 | 106 | 11.36933 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 414 | 429 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 250 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 739 | 761 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 329 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 329 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 745 | 761 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.2 | - | 0 |
| RefSeq | XP_031265040.1 | ubiquitin carboxyl-terminal hydrolase 17-like isoform X1 [Pistacia vera] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0DX72 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Rhamnella rubrinervis OX=2594499 GN=FNV43_RR17492 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20050, jg6798 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16883 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027180 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g133590 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12554, Sbi_jg12555, Sbi_jg12556, Sbi_jg53384 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg8536, Seu_jg8547 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010463 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33702, Sgl39013 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003016, gene:ENSEOMG00000003384 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6AG0022800 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30203690 |
| Apiaceae | Apium graveolens | 1 | Ag4G02513 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G005090 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103695633, gene-LOC120107559 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2324.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G15936 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G38090.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026114m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g10120.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g006010.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0068 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0063 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g09430 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0693s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g16540 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2175 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2710 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27908 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.1836, BH08.1916, CH08.2101 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0634520, gene-QOZ80_8BG0663470 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0197890.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_031113 |
| Poaceae | Oryza coarctata | 2 | Oco15G012620, Oco16G009980 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g37310.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G167000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403279 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G015870, Chr17G015280 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G796300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG066760, gene_TRIDC2BG071910 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G472000.1, TraesCS2B02G494700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb038350_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-47693 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23141 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1458, evm.TU.LG12.125 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g22510 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1707 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17462 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16442 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12062 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.1036 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007107 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15391 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3382 |
| Salicaceae | Populus euphratica | 1 | populus_peu23719 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614847 |
| Solanaceae | Solanum chilense | 1 | SOLCI006242200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003375 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3478 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0681 |
| Zosteraceae | Zostera marina | 1 | Zosma01g29400.v3.1 |