Basic Information
Locus ID:
pistato.v30202790
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
ATPase family associated with various cellular activities (AAA)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 12415968 | 12422382 | - | pistato.v30202790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 92,103.95 Da | 48.82 | 85.88 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 551 | 684 | 1.81046E-24 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 553 | 683 | 7.4E-38 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 705 | 748 | 1.7E-12 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 513 | 752 | 3.2E-57 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 685 | 761 | 1.7E-94 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 512 | 684 | 1.7E-94 | IPR027417 |
| SMART | SM00382 | AAA_5 | 549 | 686 | 1.2E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 656 | 675 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 743 | 778 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 453 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 460 | 478 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 207 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28000.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_031249013.1 | LOW QUALITY PROTEIN: nuclear valosin-containing protein-like [Pistacia vera] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A2I4GTV6 | nuclear valosin-containing protein-like OS=Juglans regia OX=51240 GN=LOC109010848 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology