Basic Information
Locus ID:
pistato.v30202700
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 12198453 | 12199951 | + | pistato.v30202700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 18,604.22 Da | 53.52 | 90.92 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 121 | 156 | 3.6E-8 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 12 | 160 | 6.23E-17 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 108 | 162 | 3.3E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 107 | 1.0E-6 | IPR015943 |
| SMART | SM00320 | WD40_4 | 38 | 76 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 117 | 157 | 9.1E-10 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 124 | 163 | 13.215325 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 124 | 163 | 12.288313 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_031251883.1 | WD repeat-containing protein 26 homolog [Pistacia vera] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J0DUD1 | Transducin family protein OS=Actinidia rufa OX=165716 GN=Acr_00g0080160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology