Basic Information
Locus ID:
pistato.v30202690
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 12196840 | 12198411 | + | pistato.v30202690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.82 | 12,410.91 Da | 43.15 | 94.78 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 4 | 36 | 0.0045 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 45 | 79 | 2.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 3 | 107 | 4.21E-22 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 111 | 7.3E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 40 | 79 | 2.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1 | 37 | 2.4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 47 | 84 | 10.284687 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 5 | 37 | 9.639578 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 47 | 88 | 13.482671 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_031251846.1 | WD repeat-containing protein 26 homolog [Pistacia vera] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1Q3AWH0 | WD40 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_03536 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology