Basic Information
Locus ID:
pistato.v30202660
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 12112870 | 12116772 | - | pistato.v30202660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 34,500.88 Da | 48.07 | 90.75 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 45 | 79 | 0.0016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 4 | 36 | 0.02 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 247 | 282 | 7.3E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 83 | 121 | 0.17 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 3 | 282 | 5.86E-43 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 238 | 305 | 8.3E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 237 | 1.8E-36 | IPR015943 |
| SMART | SM00320 | WD40_4 | 243 | 283 | 8.4E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 164 | 202 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1 | 37 | 2.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 82 | 121 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 40 | 79 | 2.2E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 47 | 84 | 10.284687 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 250 | 282 | 11.550137 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 250 | 282 | 13.950525 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 5 | 37 | 9.572741 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 47 | 88 | 13.482671 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_031251883.1 | WD repeat-containing protein 26 homolog [Pistacia vera] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A061E9N6 | Transducin family protein / WD-40 repeat family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_007644 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology