Basic Information
Locus ID:
pistato.v30202460
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
nucleic acid binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 11446768 | 11450222 | + | pistato.v30202460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 28,705.69 Da | 24.58 | 72.90 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 14 | 73 | 3.3E-8 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 8 | 88 | 2.58E-14 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 7 | 81 | 1.6E-11 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 12 | 81 | 3.7E-9 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 11 | 85 | 11.605232 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 269 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 269 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_031276523.1 | binding partner of ACD11 1-like [Pistacia vera] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | V4VTI1 | RRM domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10021732mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology