Basic Information
Locus ID:
pistato.v30201820
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 9252169 | 9254276 | + | pistato.v30201820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.19 | 35,699.57 Da | 46.49 | 94.03 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 253 | 289 | 2.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 209 | 246 | 0.0085 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 81 | 119 | 0.011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 43 | 74 | 0.083 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 40 | 296 | 2.23E-49 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 252 | 312 | 8.0E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 19 | 251 | 1.1E-41 | IPR015943 |
| SMART | SM00320 | WD40_4 | 80 | 119 | 0.0084 | IPR001680 |
| SMART | SM00320 | WD40_4 | 38 | 77 | 5.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 250 | 290 | 5.2E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 121 | 161 | 61.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 163 | 201 | 63.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 205 | 247 | 0.66 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 45 | 86 | 13.883689 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 45 | 82 | 10.601049 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 257 | 299 | 14.05078 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 257 | 292 | 11.523771 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_031251883.1 | WD repeat-containing protein 26 homolog [Pistacia vera] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J1BGM5 | WD repeat-containing protein 26 OS=Herrania umbratica OX=108875 GN=LOC110427267 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology