Basic Information
Locus ID:
pistato.v30198500
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 2892994 | 2900020 | + | pistato.v30198500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 74,139.43 Da | 51.97 | 89.26 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01657 | Salt stress response/antifungal | 277 | 348 | 2.5E-8 | IPR002902 |
| Pfam | PF00069 | Protein kinase domain | 507 | 554 | 4.7E-12 | IPR000719 |
| Pfam | PF01657 | Salt stress response/antifungal | 52 | 93 | 1.2E-6 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 160 | 257 | 5.8E-17 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 468 | 641 | 8.86E-28 | IPR011009 |
| Gene3D | G3DSA:3.30.430.20 | - | 154 | 260 | 6.6E-23 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 557 | 620 | 1.9E-6 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 270 | 376 | 2.5E-17 | IPR038408 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 440 | 504 | 1.3E-8 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 33 | 101 | 1.4E-13 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 505 | 556 | 2.2E-15 | - |
| SMART | SM00220 | serkin_6 | 478 | 615 | 0.0011 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 154 | 260 | 18.16349 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 266 | 376 | 14.63317 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 5 | 112 | 11.202424 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 365 | 666 | 9.785688 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 523 | 535 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23190.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 11. Encodes putative receptor-like protein kinase that is induced by the soil-borne vascular bacteria, Ralstonia solanacearum. Naming convention from Chen et al 2003 (PMID 14756307) | 0 |
| RefSeq | XP_031251353.1 | LOW QUALITY PROTEIN: putative cysteine-rich receptor-like protein kinase 35 [Pistacia vera] | 0 |
| Q9ZP16 | Cysteine-rich receptor-like protein kinase 11 OS=Arabidopsis thaliana OX=3702 GN=CRK11 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6N2L0Q7 | Cysteine-rich receptor-like protein kinase 25 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS159245 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 21 | pistato.v30128710, pistato.v30173520, pistato.v30173530 ... |
| Brassicaceae | Brassica nigra | 1 | BniB07g024080.2N |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG12.589, evm.TU.LG12.599 |