Basic Information
Locus ID:
pistato.v30191580
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 24960289 | 24966629 | + | pistato.v30191580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.78 | 41,072.05 Da | 54.72 | 83.19 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 8.07225E-31 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 150 | 199 | 5.72173E-31 | - |
| Pfam | PF00627 | UBA/TS-N domain | 156 | 194 | 2.2E-14 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 261 | 316 | 2.3E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 342 | 377 | 8.5E-11 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 6.9E-19 | IPR000626 |
| SUPERFAMILY | SSF46934 | UBA-like | 322 | 384 | 8.71E-15 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 153 | 206 | 3.23E-12 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 258 | 323 | 3.27E-22 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 90 | 1.75E-22 | IPR029071 |
| Gene3D | G3DSA:1.10.8.10 | - | 334 | 381 | 2.8E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 77 | 6.8E-28 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 252 | 317 | 2.5E-26 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 149 | 199 | 2.7E-22 | - |
| SMART | SM00727 | CBM | 259 | 302 | 4.7E-5 | IPR006636 |
| SMART | SM00165 | uba_6 | 342 | 379 | 7.9E-9 | IPR015940 |
| SMART | SM00165 | uba_6 | 156 | 196 | 2.1E-5 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 4.8E-22 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 385 | 3.4E-116 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 154 | 197 | 12.354117 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 339 | 380 | 14.305982 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 76 | 18.344984 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 368 | 383 | 1.7E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 336 | 352 | 1.7E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 353 | 367 | 1.7E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 287 | 309 | 1.7E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 113 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_031255833.1 | ubiquitin receptor RAD23c-like isoform X2 [Pistacia vera] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A067EV04 | Ubiquitin receptor RAD23 OS=Citrus sinensis OX=2711 GN=CISIN_1g014118mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology