Basic Information
Locus ID:
pistato.v30190700
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Ubiquitin fusion degradation protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 23546980 | 23550127 | - | pistato.v30190700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 31,469.23 Da | 48.76 | 71.91 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 34 | 152 | 3.3E-48 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 78 | 150 | 3.6E-30 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 9 | 76 | 8.4E-15 | IPR042299 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 278 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 278 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_031276329.1 | ubiquitin recognition factor in ER-associated degradation protein 1-like [Pistacia vera] | 0 |
| P70362 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Mus musculus OX=10090 GN=Ufd1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A817B7C8 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_A04P22080.1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology