halophFGD

Basic Information

Locus ID: pistato.v30188250

Species & Taxonomic ID: Pistacia vera & 55513

Genome Assembly: GWHBKLD00000000

Description: Belongs to the SKP1 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	16648455	16649011	-	pistato.v30188250

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.00	13,767.46 Da	35.35	71.58	-0.72

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01466	Skp1 family, dimerisation domain	75	113	2.6E-15	IPR016072
SUPERFAMILY	SSF81382	Skp1 dimerisation domain-like	74	113	5.76E-9	IPR036296
Gene3D	G3DSA:3.30.710.10	Potassium Channel Kv1.1; Chain A	20	115	9.7E-17	IPR011333

Gene Ontology

Biological Process:

GO:0006511 (ubiquitin-dependent protein catabolic process)

KEGG Pathway

KO Term:

K03094 (S-phase kinase-associated protein 1)

Pathway:

ko04110 (Cell cycle) map04110 (Cell cycle) ko04111 (Cell cycle - yeast) map04111 (Cell cycle - yeast) ko04114 (Oocyte meiosis) map04114 (Oocyte meiosis) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis) ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum) ko04310 (Wnt signaling pathway) map04310 (Wnt signaling pathway) ko04341 (Hedgehog signaling pathway - fly) map04341 (Hedgehog signaling pathway - fly) ko04350 (TGF-beta signaling pathway) map04350 (TGF-beta signaling pathway) ko04710 (Circadian rhythm)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT2G03170.1	SKP1-like 14.	0
RefSeq	XP_031265990.1	SKP1-like protein 14 [Pistacia vera]	0
Swiss-Prot	O81057	SKP1-like protein 14 OS=Arabidopsis thaliana OX=3702 GN=ASK14 PE=1 SV=1	0
TrEMBL	A0A067DBI8	Skp1_POZ domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g042635mg PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Anacardiaceae	Pistacia vera	2	pistato.v30188250, pistato.v30188360
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G1697, Ceq01G2096
Casuarinaceae	Casuarina glauca	1	Cgl01G2295
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate02g03070
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.2949
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_18_RagTag.285, evm.TU.Scaffold_5_RagTag.39
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-10433
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-10441, nbisL1-mrna-9209
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-10718, nbisL1-mrna-7776
Rhizophoraceae	Kandelia candel	2	add.evm.TU.utg000006l.5, add.evm.TU.utg000023l.119
Rhizophoraceae	Kandelia obovata	1	Maker00013746
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-20457
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-17179, nbisL1-mrna-6866
Salicaceae	Populus euphratica	2	populus_peu13958, populus_peu26353
Tamaricaceae	Reaumuria soongarica	1	gene_1128