Basic Information
Locus ID:
pistato.v30185770
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 10984384 | 10992704 | - | pistato.v30185770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 43,390.51 Da | 41.14 | 102.91 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 64 | 327 | 8.8E-88 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 62 | 326 | 7.02E-43 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 91 | 390 | 2.3E-90 | IPR027417 |
| SMART | SM00382 | AAA_5 | 114 | 274 | 0.0017 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 60 | 382 | 1.3E-99 | IPR013765 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 92 | 251 | 29.572716 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 258 | 332 | 19.48877 | IPR020587 |
| PRINTS | PR00142 | RecA protein signature | 184 | 213 | 8.1E-59 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 356 | 373 | 8.1E-59 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 303 | 332 | 8.1E-59 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 222 | 251 | 8.1E-59 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 270 | 298 | 8.1E-59 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 150 | 179 | 8.1E-59 | IPR013765 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10140.1 | RECA homolog 3. | 0 |
| RefSeq | XP_031272307.1 | DNA repair protein recA homolog 2, mitochondrial isoform X1 [Pistacia vera] | 0 |
| Q8RY99 | DNA repair protein recA homolog 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g10140 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5C7IM46 | DNA repair protein recA homolog 2, mitochondrial OS=Acer yangbiense OX=1000413 GN=EZV62_005328 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology