Basic Information
Locus ID:
pistato.v30185150
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 9019981 | 9023431 | - | pistato.v30185150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 43,173.82 Da | 54.83 | 84.41 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 316 | 359 | 5.77774E-15 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 25 | 94 | 8.9E-17 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 315 | 359 | 2.0E-11 | IPR001841 |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 160 | 228 | 1.6E-7 | IPR032872 |
| SUPERFAMILY | SSF57850 | RING/U-box | 309 | 364 | 1.06E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 284 | 363 | 4.5E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 317 | 358 | 1.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 317 | 359 | 12.40076 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_044468320.1 | putative RING-H2 finger protein ATL21A [Mangifera indica] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A2H5P091 | RING-type domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_089970 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology