Basic Information
Locus ID:
pistato.v30184390
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 7544258 | 7546563 | - | pistato.v30184390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 25,861.24 Da | 45.53 | 74.60 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 6 | 230 | 9.6E-88 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 116 | 220 | 1.96E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 118 | 233 | 3.3E-44 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 121 | 221 | 24.737194 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 30 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 0 |
| RefSeq | XP_031268940.1 | auxin-responsive protein IAA16-like [Pistacia vera] | 0 |
| O24407 | Auxin-responsive protein IAA16 OS=Arabidopsis thaliana OX=3702 GN=IAA16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J1A861 | Auxin-responsive protein OS=Herrania umbratica OX=108875 GN=LOC110415888 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology