Basic Information
Locus ID:
pistato.v30182480
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 5411491 | 5415646 | + | pistato.v30182480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 146,366.61 Da | 30.80 | 106.39 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 377 | 434 | 1.5E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 821 | 880 | 2.3E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 135 | 194 | 2.2E-7 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1018 | 1284 | 1.8E-47 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 673 | 733 | 1.8E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 281 | 302 | 1.5 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 23 | 59 | 1.6E-9 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 623 | 906 | 1.67E-63 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 996 | 1286 | 2.56E-78 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 36 | 354 | 3.4E-56 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 359 | 603 | 3.69E-42 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 133 | 202 | 1.5E-20 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1090 | 1297 | 9.7E-61 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 355 | 440 | 1.2E-20 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 976 | 1089 | 5.5E-38 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 132 | 2.5E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 615 | 920 | 1.8E-83 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 203 | 354 | 2.3E-42 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 441 | 614 | 3.3E-42 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 206 | 232 | 120.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 744 | 767 | 290.0 | - |
| SMART | SM00369 | LRR_typ_2 | 230 | 254 | 52.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 1014 | 1287 | 9.9E-34 | IPR000719 |
| SMART | SM00365 | LRR_sd22_2 | 278 | 304 | 320.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 445 | 468 | 120.0 | - |
| SMART | SM00369 | LRR_typ_2 | 540 | 564 | 170.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 157 | 183 | 86.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 109 | 141 | 740.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 672 | 693 | 2.6 | - |
| SMART | SM00369 | LRR_typ_2 | 867 | 890 | 18.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 744 | 768 | 17.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 157 | 179 | 55.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 278 | 302 | 57.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 819 | 843 | 370.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 109 | 133 | 26.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 588 | 612 | 52.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 206 | 229 | 71.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 720 | 743 | 18.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 181 | 205 | 14.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 326 | 350 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 672 | 696 | 15.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 85 | 108 | 13.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1014 | 1302 | 40.018314 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1020 | 1043 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1136 | 1148 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 181 | 194 | 4.6E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 160 | 173 | 4.6E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07280.1 | Leucine-rich repeat transmembrane protein kinase. Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther. | 0 |
| RefSeq | XP_031266111.1 | LOW QUALITY PROTEIN: leucine-rich repeat receptor protein kinase EMS1 [Pistacia vera] | 0 |
| Q9LYN8 | Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana OX=3702 GN=EMS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7IP74 | Protein kinase domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_005804 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12909, jg14016, jg2319, jg889 |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30034580, pistato.v30167950, pistato.v30168050 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01986 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G03190 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012465m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2102 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2175 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2700 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010232 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG058770 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12656, nbisL1-mrna-29200 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10442, nbisL1-mrna-7229 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12927, nbisL1-mrna-12928, nbisL1-mrna-2139 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.31, add.evm.TU.utg000010l.151 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17149, nbisL1-mrna-17646 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20612, nbisL1-mrna-6260 |
| Salicaceae | Populus euphratica | 2 | populus_peu29255, populus_peu30617 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631870 |
| Solanaceae | Solanum chilense | 1 | SOLCI001805500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014643 |