Basic Information
Locus ID:
pistato.v30182440
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 5378489 | 5384150 | + | pistato.v30182440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 55,252.68 Da | 49.66 | 81.58 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 215 | 266 | 8.4E-7 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 178 | 208 | 5.6E-5 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 49 | 132 | 1.4E-17 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 274 | 6.63E-48 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 314 | 375 | 8.67E-8 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 6 | 135 | 1.3E-30 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 141 | 270 | 6.0E-23 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 301 | 386 | 3.4E-7 | IPR013083 |
| SMART | SM00248 | ANK_2a | 177 | 206 | 7.8E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 1.8E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 220 | 252 | 1.4E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 1.5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 142 | 3.0 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 220 | 246 | 10.68342 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 319 | 369 | 9.199359 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 8.923309 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 220 | 246 | 10.71288 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 177 | 206 | 10.471169 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.53241 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.416153 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 8.905817 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 177 | 209 | 11.14024 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 334 | 343 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 485 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 487 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_031269506.1 | E3 ubiquitin-protein ligase XBAT33 [Pistacia vera] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | V4S480 | RING-type domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10004762mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology