Basic Information
Locus ID:
pistato.v30182120
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 5097893 | 5102566 | - | pistato.v30182120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.23 | 49,428.99 Da | 28.94 | 80.82 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18044 | CCCH-type zinc finger | 88 | 108 | 4.8E-6 | IPR041367 |
| Pfam | PF00400 | WD domain, G-beta repeat | 280 | 314 | 0.0032 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 118 | 154 | 3.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 244 | 275 | 0.22 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 116 | 447 | 7.69E-43 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 84 | 109 | 4.19E-6 | IPR036855 |
| Gene3D | G3DSA:3.30.1370.210 | - | 22 | 109 | 1.4E-9 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 110 | 260 | 4.6E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 261 | 451 | 1.4E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 360 | 403 | 5.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 194 | 231 | 4.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 115 | 154 | 1.4E-5 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 86 | 110 | 1.2E-4 | IPR000571 |
| SMART | SM00320 | WD40_4 | 406 | 443 | 4.4 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 24 | 49 | 0.13 | IPR000571 |
| SMART | SM00320 | WD40_4 | 238 | 275 | 0.02 | IPR001680 |
| SMART | SM00320 | WD40_4 | 278 | 315 | 3.3E-4 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 84 | 111 | 11.647743 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 245 | 278 | 9.071966 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 122 | 154 | 10.996502 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 245 | 284 | 11.878597 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 24 | 50 | 10.389604 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 122 | 163 | 13.68318 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 262 | 276 | 2.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 302 | 316 | 2.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 141 | 155 | 2.1E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_031280520.1 | zinc finger CCCH domain-containing protein 48-like [Pistacia vera] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5C7IP40 | WD_REPEATS_REGION domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_005774 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology