Basic Information
Locus ID:
pistato.v30181380
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 4076455 | 4079625 | - | pistato.v30181380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.44 | 30,851.10 Da | 44.95 | 89.82 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07002 | Copine | 74 | 151 | 4.3E-21 | IPR010734 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 224 | 283 | 2.5E-9 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 228 | 272 | 9.774726 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79380.1 | Ca(2)-dependent phospholipid-binding protein (Copine) family. | 0 |
| RefSeq | XP_031287489.1 | E3 ubiquitin-protein ligase RGLG4 isoform X1 [Pistacia vera] | 0 |
| Q9SAL0 | E3 ubiquitin-protein ligase RGLG4 OS=Arabidopsis thaliana OX=3702 GN=RGLG4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2I0K2P6 | RING-type domain-containing protein OS=Punica granatum OX=22663 GN=CRG98_016776 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3AG0019220 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30181380 |
| Apiaceae | Apium graveolens | 1 | Ag1G01708 |
| Brassicaceae | Brassica nigra | 1 | BniB02g005730.2N |
| Poaceae | Echinochloa crus-galli | 5 | BH05.1082, BH05.3381, BH06.1739, BH08.1774, BH08.2339 |
| Poaceae | Zea mays | 1 | Zm00001eb354350_P001 |